#bioinformatic tools

[larryhbernsteinme]

Live Notes, Real Time Conference Coverage 2020 AACR Virtual Meeting April 27, 2020 Minisymposium on AACR Project Genie & Bioinformatics 4:00 PM - 6:00 PM

Live Notes, Real Time Conference Coverage 2020 AACR Virtual Meeting April 27, 2020 Minisymposium on AACR Project Genie & Bioinformatics 4:00 PM – 6:00 PM

Live Notes, Real Time Conference Coverage 2020 AACR Virtual Meeting April 27, 2020 Minisymposium on AACR Project Genie & Bioinformatics 4:00 PM – 6:00 PM

SESSION VMS.MD01.01 – Advancing Cancer Research through an International Cancer Registry: AACR Project GENIE Use Cases   Reporter: Stephen J. Williams, PhD

April 27, 2020, 4:00 PM – 6:00 PM Virtual Meeting: All Session Times Are U.S. EDT

Session…

View On WordPress

[larryhbernsteinme]

Bioinformatic Tools For RNASeq: A Curation

Bioinformatic Tools For RNASeq: A Curation

Bioinformatic Tools For RNASeq: A Curation

Curator: Stephen J. Williams, Ph.D. 

Note:  This will be an ongoing curation as new information and tools become available.

RNASeq is a powerful tool for the analysis of the transcriptome profile and has been used to determine the transcriptional changes occurring upon stimuli such as drug treatment or detecting transcript differences between biological…

View On WordPress

[larryhbernsteinme]

BioInformatic Resources at the Environmental Protection Agency: Tools and Webinars on Toxicity Prediction

BioInformatic Resources at the Environmental Protection Agency: Tools and Webinars on Toxicity Prediction

BioInformatic Resources at the Environmental Protection Agency: Tools and Webinars on Toxicity Prediction

Curator Stephen J. Williams Ph.D.

New GenRA Module in EPA’s CompTox Dashboard Will Help Predict Potential Chemical Toxicity

Published September 25, 2018

As part of its ongoing computational toxicology research, EPA is developing faster and improved approaches to evaluate chemicals for…

View On WordPress

[larryhbernsteinme]

A Nonlinear Methodology to Explain Complexity of the Genome and Bioinformatic Information

A Nonlinear Methodology to Explain Complexity of the Genome and Bioinformatic Information

A Nonlinear Methodology to Explain Complexity of the Genome and Bioinformatic Information

Reporter: Stephen J. Williams, Ph.D.

Multifractal bioinformatics: A proposal to the nonlinear interpretation of genome

The following is an open access article by Pedro Moreno on a methodology to analyze genetic information across species and in particular, the evolutionary trends of complex genomes, by a…

View On WordPress

[juniperpublishers-biostatistics]

Characterizing the Nitroproteome Using Bioinformatic Tools: A Mini-Review

Authored by Arindam Bhattacharjee

Protein tyrosine nitration (PTN) is a post-translational modification that occurs due to the action of reactive nitrogen species (RNS). The specific tyrosine residues are mainly nitrated in the presence of nitrating agents. It is also related to neurodegenerative diseases, cellular signaling. So the characterization of nitroproteome with their functions is very much essential. In recent times bioinformatic tools become a powerful apparatus to characterize the biological objects. In this mini-review we have attempted to give an outline about the bioinformatic tools which can be used to characterize the nitration/denitration system. To read more....Full Text in Biostatistics and Biometrics Open Access Journal in Juniper Publishers

[larryhbernsteinme]

Bioinformatics Tool Review: Genome Variant Analysis Tools

Bioinformatics Tool Review: Genome Variant Analysis Tools

Bioinformatics Tool Review: Genome Variant Analysis Tools

  Curator: Stephen J. Williams, Ph.D.

The following post will be an ongoing curation of reviews of gene variant bioinformatic software.

  The Ensembl Variant Effect Predictor.

McLaren W, Gil L, Hunt SE, Riat HS, Ritchie GR, Thormann A, Flicek P, Cunningham F.

Genome Biol. 2016 Jun 6;17(1):122. doi: 10.1186/s13059-016-0974-4.

Author…

View On WordPress