Nomenclature Corner: Agranoff's Turtle
Of the nine different stereoisomers of 1,2,3,4,5,6-cyclohexanehexol, myo-inositol is arguably the most biologically relevant. myo-Inositol, in the form of phosphatidylinositol 4,5-bisphosphate (marked as A in the second image), serves critical functions in cell signalling: when hydrolyzed by phospholipase C, the secondary messenger inositol 1,4,5-trisphosphate (often abbreviated as IP3) is released. IP3 can then induce opening of calcium channels in the endoplasmic reticulum, among many other functions. In addition to this trisphosphate, myo-inositol can also be found in a wide variety of phosphorylated states in biological systems.
63 different phosphomonoesters of myo-inositol are possible, which produces a large potential for confusion when trying to precisely specify the phosphorylation states. To help mitigate this confusion, Dr. Bernard Agranoff (Professor Emeritus, University of Michigan) developed a mnemonic based on the superficial similarity of myo-inositol to a turtle when drawn in its chair form.
In this mnemonic (commonly referred to as "Agranoff's turtle"), the head, four flippers, and tail of a turtle all represent a hydroxyl group. The axial hydroxyl is referred to as the turtle's head, while the flippers and tail represent the five equatorial hydroxyls. Numbering begins with the right flipper and proceeds counterclockwise, as is conventional for a D-based numbering system. (The L-based numbering system starts at the left flipper and proceeds clockwise instead.)
Using Agranoff's turtle to guide the numbering of myo-inositol has helped reduce confusion and misunderstandings when discussing its various phosphorylated derivatives. In fact, this mnemonic has been so successful, it has even been recommended by the International Union of Biochemistry Nomenclature Committee!
References: (1): Agranoff, B. W. J. Biol. Chem. 2009, 284(32), 21121-21126. (2): Biochem. J. 1988, 258, 1-2. (Full text)











