I desprately need someone to talk to about this
I've been working on a system to allow a genetic algorithm to create DNA code which can create self-organising organisms. Someone I know has created a very effective genetic algorithm which blows NEAT out of the water in my opinion. So, this algorithm is very good at using food values to determine which organisms to breed, how to breed them, and the multitude of different biologically inspired mutation mechanisms which allow for things like meta genes and meta-meta genes, and a whole other slew of things. I am building a translation system, basically a compiler on top of it, and designing an instruction set and genetic repair mechanisms to allow it to convert ANY hexadecimal string into a valid, operable program. I'm doing this by having an organism with, so far, 5 planned chromosomes. The first and second chromosome are the INITIAL STATE of a neural network. The number and configuration of input nodes, the number and configuration of output nodes, whatever code it needs for a fitness function, and the configuration and weights of the layers. This neural network is not used at all in the fitness evaluation of the organism, but purely something the organism itself can manage, train, and utilize how it sees fit.
The third is the complete code of the program which runs the organism. Its basically a list of ASM opcodes and arguments written in hexadecimal. It is comprised of codons which represent the different hexadecimal characters, as well as a start and stop codon. This program will be compiled into executable machine code using LLVM IR and a custom instruction set I've designed for the organisms to give them a turing complete programming language and some helper functions to make certain processes simpler to evolve. This includes messages between the organisms, reproduction methods, and all the methods necessary for the organisms to develop sight, hearing, and recieve various other inputs, and also to output audio, video, and various outputs like mouse, keyboard, or a gamepad output. The fourth is a blank slate, which the organism can evolve whatever data it wants. The first half will be the complete contents of the organisms ROM after the important information, and the second half will be the initial state of the organisms memory. This will likely be stored as base 64 of its hash and unfolded into binary on compilation.
The 5th chromosome is one I just came up with and I am very excited about, it will be a translation dictionary. It will be 512 individual codons exactly, with each codon pair being mapped between 00 and FF hex. When evaulating the hex of the other chromosomes, this dictionary will be used to determine the equivalent instruction of any given hex pair. When evolving, each hex pair in the 5th organism will be guaranteed to be a valid opcode in the instruction set by using modulus to constrain each pair to the 55 instructions currently available. This will allow an organism to evolve its own instruction distribution, and try to prevent random instructions which might be harmful or inneficient from springing up as often, and instead more often select for efficient or safer instructions.
