the aftermath of scar's first attack on the elrics has a markedly different tone in 03 and mangahood and ive seen some mangahood fans says it's an example of why they dislike 03 over manga/brotherhood—in 03, the brothers are very clearly closed off from the rest of the mustang gang and reaffirm their own strong bond to each other above all, not trusting the adult military members; whereas in mangahood there IS a moment of complicity and relaxation with the mustang gang for coming to rescue them, and a lot of people cite it as part of their endearment for mangahood—the elrics aren't alone, and they learn to trust and love other people, including the military adults who have their best interests in mind.
difference in taste asides, i think that this is forgetting a crucial element of the previous eps and why exactly 03 ed and al react the way they do. unlike mangahood, where scar just appears as a demonic and horrific threat without much context except that he's from ishbal, in 03 the elrics learn about ishbal and the military's atrocities there right before confronting scar. they're told firsthand that it wasnt the heroic military action they'd been told, but a savage genocide that their friends in the military actively partook in! ed and al have a whole conversation about whether scar is justified before ever confronting him, they learn of his losses, and al.... actively believes that scar IS justified, and that were al in scar's shoes he too might snap this way. scar's actions are immediately recontextualized to the viewer before we see him attack our protagonists, a great amount of sympathy is given to him by the narrative and by alphonse. and not only do the brothers have to suddenly contend with how their plucky military colleagues have aided in genocide, and that they have been actively lied to by the military, but then ed gets the bomb dropped on him that mustang killed winry's parents. his superior officer and the guy leading the plucky military crew is directly responsible for the suffering of their close friend!
so like, between this, scar almost killing ed but showing al certain empathy and promising edward he won't harm his brother, having to swallow that not only is the military is far worse an institution than either the brothers suspected but that the people cheerfully teasing them and showing concern for their safety have been active participants in unbelievable levels of suffering (including the suffering of an amestrian girl they DO know)..... yeah, of course al and ed end up being far more closed off to the mustang gang after scar's attack! ed didnt just almost die and lose his arm, he has to suddenly contend with very ugly truths and how much mustang might have been hiding from him til now. no wonder they reaffirm their bond to each other—how do you trust these people when they're still in the military after being ordered to murder innocent people and the help lie that it was a simple and necessary military operation? ed at this point is still somewhat stuck in his "well Equivalent Exchange means the world is fair and also i got some deep racist issues embedded in me, so surely the military didnt commit genocide for no good reason right?" but like.... he's still swallowing the pill that he was lied to, that mustang murdered winry's parents on direct orders from the military, that his becoming a state alchemist really was selling his soul to the devil. and al is coping with his own mortality and body, and with how what he would have done had he been scar, how fucked the entire situation is.
honestly it's a much better take on scar imo but it's also yet another example of how 03 is bitingly critical of not only the amestrian military as an institution, but of the people who willingly participate in it. there's no neat separation of the good military heroes and the evil military dogs—once you join the amestrian military you ARE their dog. you've signed away your soul. you're an active participant in their crimes, unless you leave and actively begin opposing them. scar pointed out himself he would have let ed live had ed quit the military earlier! he's only interested in going after the people who have been actively participating in amestris's military atrocities. and yeah it does mean that the mustang crew in 03 is not the lovable goof squad or Found Family people care about in mangahood, but tbh 03 is just fundamentally uninterested in these kinds of dynamics at all.
i think it's ok to have different taste and say, well, i need/want a crew of lovable goofs and found family to enjoy fma as a whole! but i think it's completely unfair to criticise 03 for saying that your favourite war criminals are.... war criminals, and that the teenage protagonists' realisation of the extent of their crimes should not at all affect their dynamic with the crew.